PlantExp -- Arabidopsis thaliana --
Plant Expression Portal
Co-expression (WGCNA) analysis Job: coexpress
  Job name test
  Consumed time 04:40:11
  Expression metric
TPM (remove batch effect: none)
  Network type
unsigned
  Correlation type
pearson
  Min module size
30
  Mad cutoff 0.01
  Power estimate 7 (pick soft threshold pdf)
  Tom similarity threshold 0.2
  GO Enrichment Method: Hypergeometry test based on Genome Annotation, P-value: 0.05, Q-value: 0.2
  Pathway Enrichment Method: Hypergeometry test based on KAAS, P-value: 0.05, Q-value: 0.2
  Download Results
Sample clustering
(Display in PDF)
Module eigengene clustering
Dendrogram
(Display in PDF)
Heatmap
(Display in PDF)
Gene dendrogram and module colors
(Display in PDF)
Loading genes with module names

Relationships between modules and traits(samples)
(Display in PDF)