PlantExp -- Glycine max --
Plant Expression Portal
Search gene expressions by sequence similarity
 
Program Database    
E-value Word size    
Gap costs
Match/mimatch score
   
 
Expression Level  Metric   TPM ?Transcripts Per Million (TPM) is a normalization method for RNA-seq, should be read as "for every 1,000,000 RNA molecules in the RNA-seq sample, x came from this gene/transcript."  FPKM?Fragments Per Kilobase of transcript per Million mapped reads(FPKM) is a expression level normalization method which normalizes read count based on gene length and the total number of mapped reads.
Splicing profile      Metric  JCEC ?The PSI value is calculated including both reads that span junctions defined by rmats (Junction Counts) and reads that do not cross an exon boundary (Exon Counts). JC?The PSI value is calculated including only reads that span junctions defined by rmats (Junction Counts)    Read coverage ?Only alternative splicing events with enough read coverage are included.