STIPBase
S
OYBEAN
T
RANSPOSON
I
NSERTION
P
OLYMORPHISM DATA
BASE
Home
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Genomic Signature
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SoyBase
soykb
Ensembl Plants
Phytozome
PlantGDB
Search Transposon Polymorphism Sites by Gene Sequence
Program
blastn
blastp
blastx
Database
cDNA
protein
E-value
Word size
16
20
24
28
32
64
128
256
Gap costs
Existence:5; Extension:2
Existence:2; Extension:2
Existence:1; Extension:2
Existence:0; Extension:2
Existence:3; Extension:1
Existence:2; Extension:1
Existence:1; Extension:1
Match score
1, -2
1, -3
1, -4
2, -3
4, -5
1, -1
Gene element
Any
Non-coding regions
Coding region
Intronic region
Intergenic region
Transposon site type
Any
Reference annotation site
Non-reference insertion site
Transposon sites
Contact: Jinding Liu, biotec(At)njau.edu.cn
©Bioinformatics Center, Nanjing Agricultural University