Family: CRK

Switch to other families

Lineage coverage
Species 
94.22%
Genus 
91.25%
Family 
87.5%
Order 
80%
Class 
41.67%
Phylum 
25%

Description:
CRKs generally contain two cysteine-rich repeat domains that are highly similar to fungal lectins (Vaattovaara et al., 2019). However, the conserved C-X8-C-X2-C motif is distinct from that in G-type lectins. This domain is also known as DUF26 or stress-antifungal domain, plays because it has a role in salt stress response and has antifungal activity. To date, CRKs are associated with plant defense and oxidative stress responses, programmed cell death, and development (Dievart et al., 2020). The hidden Markov model (HMM) PF01657 was used for the CRK classification.

References:
1. Dievart A, Gottin C, Perin C, Ranwez V, Chantret N. 2020. Origin and diversity of plant receptor-like kinases. Annu Rev Plant Biol. 71:131-156. doi: 10.1146/annurev-arplant-073019-025927. PMID: 32186895.
2. Vaattovaara A, Brandt B, Rajaraman S, Safronov O, Veidenberg A, Luklova M, Kangasj?rvi J, L?ytynoja A, Hothorn M, Saloj?rvi J, Wrzaczek M. 2019. Mechanistic insights into the evolution of DUF26-containing proteins in land plants. Commun Biol. 2:56. doi: 10.1038/s42003-019-0306-9. PMID: 30775457.

List of CRK in RLKomes

CRK in Arabidopsis thaliana (3702.GCA_000001735.1)

Genetic map for RLKs in reference sequences with length > 1MB

Protein sequence length distribution of CRK family

Summary of function domain topology distribution for CRK family

Domain topology percentage

-PF01657-PF01657-TM-Kinase-
92.11%
-PF01657-PF01657-TM-Kinase-PF11883-
2.63%
-PF01657-TM-Kinase-
2.63%
-PF01657-PF01657-PF01657-TM-Kinase-
2.63%

Domain word cloud

Spatial structure

RLK list
(Click RLK IDs to see its details in the RLK page or click Gene ID to explore its details in its original database. click cDNA, CDS or Prteoin button to download its corresponding sequences.)
Phylogenetic tree
Explore the evolutionary relationships of the CRK family members in phylogenetic tree

Zoom in on circular tree
Zoom in on rectangular tree
Zoom in on sequence alignments
Download newick file
Contact: Jinding Liu, biotec(At)njau.edu.cn
©Bioinformatics Center and Plant Phytophthora Interaction Laboratory, Nanjing Agricultural University