Foldseek
Foldseek can be performed to query RLKs with 3D-structure stored in the rlkdb. The parameters can be freely customized. The input must be in PDB format or uniprot ID.
Query input
PDB or uniprot ID
Search model
Alignment 3Di+AA TM alignment 3di alignment Sensitivity sensitiver sensitive fast faster
Result filter
E-value 1e-50 1e-20 1e-10 1e-5 1e-3 1e-2 1e-1 1 Coverage 90% 70% 50% 30% 10%
Max targets 10 20 50 100 1000
Result(View alignment)