Family: LysM

Switch to other families

Lineage coverage
Species 
96.75%
Genus 
94.38%
Family 
92.5%
Order 
88.89%
Class 
66.67%
Phylum 
50%

Description:
LysM-RLK is another lectin RLK family that contains extracellular LysM domains. Multiple ligands from bacteria and fungi have been shown to be perceived by the LysM domains, including chitin, b-glucans, peptidoglycans, and lipopolysaccharide (Yang et al., 2022). Thus, LysM-RLKs play dual roles in plant immunity and in the establishment of the arbuscular mycorrhizal and rhizobium-legume symbioses (Zhang et al., 2021). The hidden Markov model (HMM) PF01476 was used for the LysM-RLK classification.

References:
1. Yang C, Wang E, Liu J. 2022. CERK1, more than a co-receptor in plant-microbe interactions. New Phytol. 234(5):1606-1613. doi: 10.1111/nph.18074. PMID: 35297054.
2. Zhang C, He J, Dai H, Wang G, Zhang X, Wang C, Shi J, Chen X, Wang D, Wang E. 2021. Discriminating symbiosis and immunity signals by receptor competition in rice. Proc Natl Acad Sci U S A. 118(16):e2023738118. doi: 10.1073/pnas.2023738118. PMID: 33853950.

List of LysM in RLKomes

LysM in Arabidopsis thaliana (3702.GCA_000001735.1)

Genetic map for RLKs in reference sequences with length > 1MB

Protein sequence length distribution of LysM family

Summary of function domain topology distribution for LysM family

Domain topology percentage

-PF01476-PF01476-PF01476-TM-Kinase-
60.00%
-PF01476-TM-Kinase-
20.00%
-PF01476-PF01476-TM-Kinase-
20.00%

Domain word cloud

Spatial structure

RLK list
(Click RLK IDs to see its details in the RLK page or click Gene ID to explore its details in its original database. click cDNA, CDS or Prteoin button to download its corresponding sequences.)
Phylogenetic tree
Explore the evolutionary relationships of the LysM family members in phylogenetic tree

Zoom in on circular tree
Zoom in on rectangular tree
Zoom in on sequence alignments
Download newick file
Contact: Jinding Liu, biotec(At)njau.edu.cn
©Bioinformatics Center and Plant Phytophthora Interaction Laboratory, Nanjing Agricultural University