Family: PERK

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Lineage coverage
Species 
97.11%
Genus 
95%
Family 
92.5%
Order 
88.89%
Class 
66.67%
Phylum 
50%

Description:
PERKs are proline-rich extensin-like receptor kinases that constitute a small RLK family containing an extracellular proline-rich domain. Studies on the functions of PERKs are rare, but most suggest that PERKs regulate mainly plant growth and development (Invernizzi et al., 2022). Since no hidden Markov model (HMM) could be used for the PERK classification, RLKs are first classified into different families with HMMs and the remain unclassified RLKs were clustered by protein sequence similarity.

References:
1. Invernizzi M, Hanemian M, Keller J, Libourel C, Roby D. PERKing up our understanding of the proline-rich extensin-like receptor kinases, a forgotten plant receptor kinase family. 2022. New Phytol. 235(3):875-884. doi: 10.1111/nph.18166. PMID: 35451507.

List of PERK in RLKomes

PERK in Arabidopsis thaliana (3702.GCA_000001735.1)

Genetic map for RLKs in reference sequences with length > 1MB

Protein sequence length distribution of PERK family

Summary of function domain topology distribution for PERK family

Domain topology percentage

-TM-Kinase-
96.30%
-PF02439-PF08263-PF13855-TM-Kinase-
3.70%

Domain word cloud

Spatial structure

RLK list
(Click RLK IDs to see its details in the RLK page or click Gene ID to explore its details in its original database. click cDNA, CDS or Prteoin button to download its corresponding sequences.)
Phylogenetic tree
Explore the evolutionary relationships of the PERK family members in phylogenetic tree

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Zoom in on sequence alignments
Download newick file
Contact: Jinding Liu, biotec(At)njau.edu.cn
©Bioinformatics Center and Plant Phytophthora Interaction Laboratory, Nanjing Agricultural University