Family: SPARK

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Lineage coverage
Species 
96.75%
Genus 
94.38%
Family 
92.5%
Order 
88.89%
Class 
66.67%
Phylum 
50%

Description:
When Arabidopsis RLKs were first classified into different groups based on their extracellular domains in 2001, two were defined as unknown receptor kinases (Shiu and Bleecker, 2001). Recently, a rice RLK ARK1 (Arbuscular Receptor-like Kinase 1) was found to regulate arbuscular mycorrhizal symbiosis (Roth et al., 2018). A systematic phylogenetic analysis further showed that ARK and SIMILAR PROTEIN TO ARK 1 (SPARK1) harbor a newly identified SPARK domain in their extracellular regions, which has ancient origins in streptophyte algae (Montero et al., 2021). The hidden Markov model (HMM) PF19160 was used for the SPARK classification.

References:
1. Montero H, Lee T, Pucker B, Ferreras-Garrucho G, Oldroyd G, Brockington SF, Miyao A, Paszkowski U. 2021. A mycorrhiza-associated receptor-like kinase with an ancient origin in the green lineage. Proc Natl Acad Sci U S A. 118(25):e2105281118. doi: 10.1073/pnas.2105281118. PMID: 34161289.
2. Roth R, Chiapello M, Montero H, Gehrig P, Grossmann J, O'Holleran K, Hartken D, Walters F, Yang SY, Hillmer S, Schumacher K, Bowden S, Craze M, Wallington EJ, Miyao A, Sawers R, Martinoia E, Paszkowski U. 2018. A rice Serine/Threonine receptor-like kinase regulates arbuscular mycorrhizal symbiosis at the peri-arbuscular membrane. Nat Commun. 9(1):4677. doi: 10.1038/s41467-018-06865-z. PMID: 30410018.
3. Shiu SH, Bleecker AB. 2001. Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases. Proc Natl Acad Sci U S A. 98(19):10763-8. doi: 10.1073/pnas.181141598. PMID: 11526204.

List of SPARK in RLKomes

SPARK in Arabidopsis thaliana (3702.GCA_000001735.1)

Genetic map for RLKs in reference sequences with length > 1MB

Protein sequence length distribution of SPARK family

Summary of function domain topology distribution for SPARK family

Domain topology percentage

-PF19160-TM-Kinase-
100.00%

Domain word cloud

Spatial structure

RLK list
(Click RLK IDs to see its details in the RLK page or click Gene ID to explore its details in its original database. click cDNA, CDS or Prteoin button to download its corresponding sequences.)
Phylogenetic tree
Explore the evolutionary relationships of the SPARK family members in phylogenetic tree

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Zoom in on sequence alignments
Download newick file
Contact: Jinding Liu, biotec(At)njau.edu.cn
©Bioinformatics Center and Plant Phytophthora Interaction Laboratory, Nanjing Agricultural University