Family: WAK

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Lineage coverage
Species 
97.11%
Genus 
95%
Family 
92.5%
Order 
88.89%
Class 
66.67%
Phylum 
50%

Description:
Arabidopsis WAK1 (wall-associated kinase) is the first identified WAK-RLK, the extracellular domain of which shows similarities to vertebrate epidermal growth factor (EGF)-like domains (He et al., 1996). This family plays important roles in cell expansion and pathogen resistance. Here, WAK, WAK-Like, and LRK10L (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like) subgroups are all classified into the WAK-RLK family due to their similar extracellular domain structure (Verica and He, 2002). The hidden Markov models (HMMs) used for the WAK-RLK classification include: PF13947, PF14380, PF00008, PF08488, PF07645, PF12662, and PF12947.

References:
1. He ZH, Fujiki M, Kohorn BD. 1996. A cell wall-associated, receptor-like protein kinase. J Biol Chem. 271(33):19789-93. doi: 10.1074/jbc.271.33.19789. PMID: 8702686.
2. Verica JA, He ZH. 2002. The cell wall-associated kinase (WAK) and WAK-like kinase gene family. Plant Physiol. 129(2):455-9. doi: 10.1104/pp.011028. PMID: 12068092.

List of WAK in RLKomes

WAK in Arabidopsis thaliana (3702.GCA_000001735.1)

Genetic map for RLKs in reference sequences with length > 1MB

Protein sequence length distribution of WAK family

Summary of function domain topology distribution for WAK family

Domain topology percentage

-PF13947-PF08488-TM-Kinase-
17.65%
-PF13947-PF14380-TM-Kinase-
14.71%
-PF13947-TM-Kinase-
14.71%
-PF13947-PF13947-PF08488-TM-Kinase-
5.88%
-PF13947-PF13947-TM-Kinase-
5.88%
-PF13947-PF14380-PF13947-PF14380-TM-Kinase-
5.88%
-PF13947-PF07645-PF07645-TM-Kinase-
5.88%
-PF08488-PF08488-TM-Kinase-
2.94%
-PF13947-PF12947-PF07645-TM-Kinase-
2.94%
-PF13947-PF08488-PF08488-PF08488-TM-Kinase-
2.94%
-PF13947-PF13947-PF14380-TM-Kinase-
2.94%
-PF13947-PF07645-TM-Kinase-
2.94%
-PF07645-PF13947-PF08488-PF08488-PF07645-PF07645-TM-Kinase-
2.94%
-PF13947-PF07645-PF07645-PF07645-PF07645-TM-Kinase-
2.94%
-PF13947-PF14380-PF13947-PF14380-PF13947-PF14380-PF13947-PF14380-TM-Kinase-
2.94%
-PF13947-PF12662-PF07645-PF08488-TM-Kinase-
2.94%
-PF13947-PF13947-PF08488-PF07645-PF07645-TM-Kinase-
2.94%

Domain word cloud

Spatial structure

RLK list
(Click RLK IDs to see its details in the RLK page or click Gene ID to explore its details in its original database. click cDNA, CDS or Prteoin button to download its corresponding sequences.)
Phylogenetic tree
Explore the evolutionary relationships of the WAK family members in phylogenetic tree

Zoom in on circular tree
Zoom in on rectangular tree
Zoom in on sequence alignments
Download newick file
Contact: Jinding Liu, biotec(At)njau.edu.cn
©Bioinformatics Center and Plant Phytophthora Interaction Laboratory, Nanjing Agricultural University