Brassica rapa (3711.GCA_000309985.1)

RLKomes grouped by lineage of order

Species:     Brassica rapa

Lineage:     Streptophyta,Dicotyledoneae,Brassicales,Brassicaceae,Brassica

Taxonomy: 3711

Assembly:  GCA_000309985.1

Cultivar:     Chiifu-401-42

Database:   Ensembl

RLK num:   648

List of RLK families

Click family name on x-axis to load corresponding RLKs below

List of RLKs in the LRR family

Genetic map for RLKs in reference sequences with length > 1MB

Protein sequence length distribution of LRR family

Summary of function domain topology distribution for the RLK family

Domain topology percentage

-PF08263-PF13855-TM-Kinase-
16.24%
-PF08263-PF13855-PF13855-TM-Kinase-
12.92%
-PF08263-PF13855-PF13855-PF13855-TM-Kinase-
8.86%
-PF08263-PF13855-PF13855-PF13855-PF13855-TM-Kinase-
7.75%
-PF12819-PF13855-TM-Kinase-
7.01%
-PF08263-PF13855-PF13855-PF13855-PF13855-PF13855-TM-Kinase-
3.69%
-PF13855-PF13855-PF11721-TM-Kinase-
3.32%
-PF13855-TM-Kinase-
3.32%
-PF13855-PF13855-TM-Kinase-
3.32%
-PF08263-TM-Kinase-
2.95%
-PF12819-PF12799-TM-Kinase-
2.58%
-PF13855-PF13855-PF13855-PF13855-PF11721-TM-Kinase-
2.21%
-PF13855-PF13855-PF13855-TM-Kinase-
2.21%
-PF08263-PF12799-TM-Kinase-
1.85%
-PF12799-TM-Kinase-
1.85%
-PF13855-PF13855-PF13855-PF13855-TM-Kinase-
1.48%
-PF08263-PF13855-PF13855-PF13855-PF13855-PF13855-PF13855-TM-Kinase-
1.48%
-PF08263-PF13855-PF13855-PF08263-PF13855-TM-Kinase-
1.11%
-PF13855-PF11721-TM-Kinase-
1.11%
-PF13855-PF13855-PF13855-PF11721-TM-Kinase-
1.11%

Domain word cloud

3D structure

RLK list
(Click RLK IDs to see its details in the RLK page or click Gene ID to explore its details in its original database. click cDNA, CDS or Prteoin button to download its corresponding sequences.)
Phylogenetic tree
Explore the evolutionary relationships of the RLK family members in phylogenetic tree.

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Zoom in on rectangular tree
Zoom in on sequence alignments
Download newick file
Contact: Jinding Liu, biotec(At)njau.edu.cn
©Bioinformatics Center and Plant Phytophthora Interaction Laboratory, Nanjing Agricultural University